MultiQC needs Python version 2.7+, 3.4+ or 3.5+. To see if you have python installed, run python -version on the command line. Step back and think about Python virtual environments / conda instead (see below). If you find yourself prepending sudo to any MultiQC commands, take a This often causes problems and it's a little risky to mess Installing MultiQC System Pythonīefore we start - a quick note that using the system-wide installation of Python It also saves a directory of dataįiles with all parsed data for further downstream use. Generates a single stand-alone HTML report file. It parses relevant information from these and When you launch MultiQC, it recursively searches through any provided file pathsĪnd finds files that it recognises. It's designed to be placed at the end of analysis pipelines or to be run manually MultiQC doesn't run other tools for you. MultiQC is a reporting tool that parses summary statistics from results and log files
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